Index

B

BandsObservation (class in bandwitch.ClonesObservations) bandwitch.bands_predictions module

bandwitch.Ladder module

C

Clone (class in bandwitch.ClonesObservations) ClonesObservations (class in bandwitch.ClonesObservations)

CloneValidation (in module bandwitch.ClonesObservations) compute_sequence_digestions_migrations() (in module bandwitch.bands_predictions)

D

DigestionProblem (in module bandwitch.DigestionProblem)

dna_size_to_migration() (bandwitch.Ladder.Ladder method)

F

from_aati_fa_archive() (bandwitch.ClonesObservations.BandsObservation static method)

G

get_clone_digestion_bands() (bandwitch.ClonesObservations.ClonesObservations method)

get_digestion_bands_for_construct() (bandwitch.ClonesObservations.ClonesObservations method)

I

IdealDigestionsProblem (class in bandwitch.DigestionProblem)

identify_all_clones() (bandwitch.ClonesObservations.ClonesObservations method) identify_bad_parts() (bandwitch.ClonesObservations.ClonesObservations static method)

L

Ladder (class in bandwitch.Ladder)

M

migration_score() (bandwitch.DigestionProblem.IdealDigestionsProblem method) module bandwitch.bands_predictions bandwitch.Ladder

P

partial_digests_analysis() (bandwitch.ClonesObservations.ClonesObservations method) patterns_discrepancy() (bandwitch.ClonesObservations.BandsObservation method) plot_all_validations_patterns() (bandwitch.ClonesObservations.ClonesObservations method) plot_distances_map() (bandwitch.DigestionProblem.SeparatingDigestionsProblem method)

plot_partial_digests_analysis() (bandwitch.ClonesObservations.ClonesObservations static method) plot_validations_plate_map() (bandwitch.ClonesObservations.ClonesObservations method) predict_digestion_bands() (in module bandwitch.bands_predictions) predict_sequence_digestions() (in module bandwitch.bands_predictions)

S

SeparatingDigestionsProblem (class in bandwitch.DigestionProblem)

SetCoverProblem (in module bandwitch.DigestionProblem)

T

to_bandwagon_bandpattern() (bandwitch.ClonesObservations.BandsObservation method)

V

validate_all_clones() (bandwitch.ClonesObservations.ClonesObservations method)

validate_bands() (bandwitch.ClonesObservations.Clone method) validations_summary() (bandwitch.ClonesObservations.ClonesObservations method)

W

write_identification_report() (bandwitch.ClonesObservations.ClonesObservations method)