Index

C

compare_letters() (in module genealloy) compare_sequence_tuplelists() (in module genealloy) compare_sequence_tuplelists_in_all_frames() (in module genealloy)

compare_then_get_letter_recursively() (in module genealloy) convert_codonlist_to_tuplelist() (in module genealloy) convert_seq_to_codons() (in module genealloy)

D

Duodon (class in genealloy)

F

find_partial_overlaps() (in module genealloy)

G

genealloy.aa_to_codon_extended (built-in variable) genealloy.allowed_aa_transitions (built-in variable) genealloy.ambiguity_code_to_nt_set (built-in variable) genealloy.codon_extended_to_aa (built-in variable) genealloy.codon_to_aa (built-in variable)

genealloy.complement_table (built-in variable) generate_swaptable() (in module genealloy) get_complement_tuplelist() (in module genealloy) get_reverse_complement_tuplelist() (in module genealloy) get_reverse_tuplelist() (in module genealloy)

M

make_genealloy() (in module genealloy)

make_transition_dictionary() (in module genealloy)

S

SeqStep (class in genealloy)

W

walk_seqstep() (in module genealloy)