from .Overhang import Overhang, generate_all_overhangs
from .OverhangSet import OverhangSet
from .tools import (
order_overhangs,
generate_overhang_pairs,
subset_data_for_overhang,
plot_data,
filter_overhangs,
)
from .reports import write_pdf_report, write_overhangset_report
DISASTANDARD = [
"AATT", # palindromic error
"TAGG",
"CCTA", # reverse complements error
"TCCG",
"TCCG", # duplicate overhangs error
"CACC", # weakest correct warning
"GACT", # self-misannealing warning
"ATGG",
"CCAG", # misannealing pair warning
]