API reference

crecombio.count_number_of_sites(sequence, site)

Count the number of recombination sites in a sequence.

Parameters:

• sequence (SeqRecord) – A Biopython SeqRecord object.

• site (str) – The site sequence.

crecombio.recombine(sequences, recombinase='Flp')

Simulate recombination and return sequences.

Parameters:

• sequences (list) – List of one or two Biopython SeqRecord objects.

• recombinases (str, optional) – Recombinase name. Default is ‘Flp’.

crecombio.recombine_one_sequence(sequences, recombinase='Flp')

Simulate recombination of one sequence.

crecombio.recombine_two_sequences(sequences, recombinase='Flp')

Simulate recombination of two sequences.