Index

B

blast_against_taxid() (genome_collector.GenomeCollection method)

D

datafile_path() (genome_collector.GenomeCollection method)

download_taxid_genome_data_from_ncbi() (genome_collector.GenomeCollection method) download_taxid_genome_infos_from_ncbi() (genome_collector.GenomeCollection method)

G

generate_blast_db_for_taxid() (genome_collector.GenomeCollection method) generate_bowtie_index_for_taxid() (genome_collector.GenomeCollection method) GenomeCollection (class in genome_collector) get_taxid_biopython_records() (genome_collector.GenomeCollection method)

get_taxid_blastdb_path() (genome_collector.GenomeCollection method) get_taxid_bowtie_index_path() (genome_collector.GenomeCollection method) get_taxid_genome_data_path() (genome_collector.GenomeCollection method) get_taxid_infos() (genome_collector.GenomeCollection method)

L

list_locally_available_taxids() (genome_collector.GenomeCollection method)

list_locally_available_taxids_names() (genome_collector.GenomeCollection method)

R

remove_all_local_data_files() (genome_collector.GenomeCollection method)

remove_all_taxid_files() (genome_collector.GenomeCollection method)