API reference

tatapov.data_subset(dataframe, overhangs, add_reverse=True)

Restrict a Tatapov dataframe to a set of overhangs.

Parameters:

  • dataframe (DataFrame) – One of the data sheets provided by Tatapov, e.g. annealing_data["37C"]["01h"].

  • overhangs (list) – List of overhangs.

  • add_reverse (bool) – If True (recommended), the reverse-complements of the overhangs in the provided list will also be kept.

tatapov.plot_data(df, ax=None, colorbar=True, figwidth=None, plot_color='Blues')

Plot a (restricted) Tatapov dataframe. Requires matplotlib installed.

Parameters:

  • df (DataFrame) – One of the data sheets provided by Tatapov, e.g. annealing_data["37C"]["01h"]. Or a restriction using data_subset.

  • ax (matplotlib.axes.Axes, optional) – A Matplotlib ax. If none is provided, one will be created and returned at the end.

  • colorbar (bool) – If True, the figure will have a colorbar.

  • figwidth (float) – Custom width of the figure (which will be square shaped).

  • plot_color (str) – A Matplotlib colormap name.

tatapov.relative_self_annealings(annealing_data, standardize_overhangs=False, ignore_palyndroms=True)
tatapov.cross_annealings(annealing_data)
tatapov.reverse_complement(seq)
tatapov.list_overhangs(standard_overhangs_only=False, non_palyndromic=True)