Index

A

annotate_biopython_record() (in module dna_features_viewer.biotools)

annotate_feature() (dna_features_viewer.GraphicRecord method) autoselect_label_color() (dna_features_viewer.GraphicRecord method)

B

BiopythonTranslator (class in dna_features_viewer)

bokeh_feature_patch() (dna_features_viewer.GraphicRecord method)

C

CircularGraphicRecord (class in dna_features_viewer) complement() (in module dna_features_viewer.biotools) compute_feature_box_color() (dna_features_viewer.BiopythonTranslator method) compute_feature_box_linewidth() (dna_features_viewer.BiopythonTranslator method) compute_feature_color() (dna_features_viewer.BiopythonTranslator method) compute_feature_fontdict() (dna_features_viewer.BiopythonTranslator method) compute_feature_html() (dna_features_viewer.BiopythonTranslator method)

compute_feature_label() (dna_features_viewer.BiopythonTranslator method) compute_feature_label_link_color() (dna_features_viewer.BiopythonTranslator method) compute_feature_linewidth() (dna_features_viewer.BiopythonTranslator method) compute_filtered_features() (dna_features_viewer.BiopythonTranslator method) coordinates_in_plot() (dna_features_viewer.CircularGraphicRecord method) (dna_features_viewer.GraphicRecord method) crop() (dna_features_viewer.GraphicFeature method)

D

determine_annotation_height() (dna_features_viewer.CircularGraphicRecord method) (dna_features_viewer.GraphicRecord method)

dna_features_viewer.biotools (module)

E

extract_graphical_translation() (in module dna_features_viewer.biotools)

F

finalize_ax() (dna_features_viewer.CircularGraphicRecord method) (dna_features_viewer.GraphicRecord method)

find_narrowest_text_wrap() (in module dna_features_viewer.biotools) from_biopython_feature() (dna_features_viewer.GraphicFeature static method)

G

GraphicFeature (class in dna_features_viewer)

GraphicRecord (class in dna_features_viewer)

I

initialize_ax() (dna_features_viewer.CircularGraphicRecord method) (dna_features_viewer.GraphicRecord method)

L

length() (dna_features_viewer.GraphicFeature property)

load_record() (in module dna_features_viewer.biotools)

O

overlaps_with() (dna_features_viewer.GraphicFeature method)

P

place_annotation() (dna_features_viewer.GraphicRecord method) plot() (dna_features_viewer.GraphicRecord method) plot_feature() (dna_features_viewer.CircularGraphicRecord method) (dna_features_viewer.GraphicRecord method) plot_on_multiple_lines() (dna_features_viewer.GraphicRecord method)

plot_on_multiple_pages() (dna_features_viewer.GraphicRecord method) plot_sequence() (dna_features_viewer.GraphicRecord method) plot_translation() (dna_features_viewer.GraphicRecord method) plot_with_bokeh() (dna_features_viewer.GraphicRecord method) position_to_angle() (dna_features_viewer.CircularGraphicRecord method)

R

reverse_complement() (in module dna_features_viewer.biotools)

S

span() (dna_features_viewer.GraphicRecord property)

split_in_two() (dna_features_viewer.GraphicFeature method) split_overflowing_features_circularly() (dna_features_viewer.GraphicRecord method)

T

to_biopython_record() (dna_features_viewer.GraphicRecord method)

translate() (in module dna_features_viewer.biotools)

X

x_center() (dna_features_viewer.GraphicFeature property)