DiffBlocks¶
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class
geneblocks.DiffBlocks(s1, s2, blocks)[source]¶ Class to generate and represent DiffBlocks.
Usage:
>>> DiffBlocks.from_sequences(s1, s2)
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static
from_sequences(s1, s2, blast_over=500, max_complexity=100000000.0)[source]¶ Create DiffBlocks by comparing two sequences.
- Parameters
- s1, s2
Two sequences, either “ATGC…” strings or Biopython records.
- blast_over
A blast will be triggered to accelerate homology finding if len(s1) + len(s2) > blast_over.
- max_complexity
If len(s1) * len(s2) is over max_complexity, no analysis is done and s1 is just labeled as a “change” of s2 (useful internally during the recursions of this method).
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static